PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454746.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 177aa    MW: 20023.4 Da    PI: 4.8218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-052951123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ Fs+   L  H++ H
  XP_016454746.1 29 YRCSFCKRGFSNAQALGGHMNIH 51
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-62755No hitNo description
Gene3DG3DSA:3.30.160.601.9E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4682956IPR007087Zinc finger, C2H2
SMARTSM003550.00532951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEIDPSNSEK PDQITWTSNE LGLGHVKFYR CSFCKRGFSN AQALGGHMNI HRKDRARLRE  60
FSSENLLSLD INNSFNPPPP ENDDSLQGEV SYDEIISSPS KRPCVNTSKE NDRSHEVIIG  120
DLLQLPLFKE TPLIKEASNC VDRQVEEKGM QLNPVSELDL ELRLGMEPPH ESSMKTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454746.11e-129PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLK4CRD73e-41K4CRD7_SOLLC; Uncharacterized protein
STRINGSolyc09g011110.1.11e-40(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein